Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs117639735 chr10:69755143 A/G 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117675822 chr16:89919081 C/A 0.000185 172 25.87 23.37 36.37 KM Plot
PCPG rs117683816 chr12:56638267 T/C 9.68E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs117708010 chr8:53844026 G/A 0.00046 172 24.23 27.27 6.1 KM Plot
PCPG rs117727370 chr10:102308817 G/C 9.54E-6 172 24.1 28.93 25.17 KM Plot
PCPG rs117729148 chr7:1108531 G/A 0.000262 173 25.87 24.95 49.58 KM Plot
PCPG rs117741213 chr18:51878213 T/C 4.06E-11 177 25.17 34.73 10.3 KM Plot
PCPG rs11775511 chr8:11272079 C/T 3.45E-5 178 25.77 16.28 17.15 KM Plot
PCPG rs117758227 chr9:36133979 A/C 0 170 25.53 30.67 2.93 KM Plot
PCPG rs117766886 chr10:69747503 G/T 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117768322 chr17:1440058 T/G 1.14E-5 178 24.7 26.73 25.17 KM Plot
PCPG rs117775182 chr10:69791525 T/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117779516 chr12:56750872 G/C 1.22E-7 175 25.53 28.17 9.98 KM Plot
PCPG rs11778778 chr8:121509199 T/C 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs117807751 chr20:6028870 G/C 0 178 25.47 23.53 2.93 KM Plot